STRINGSTRING
DVU_0214 DVU_0214 DVU_0218 DVU_0218 DVU_0217 DVU_0217 DVU_2851 DVU_2851 DVU_2853 DVU_2853 DVU_0216 DVU_0216 DVU_2852 DVU_2852 DVU_2854 DVU_2854 DVU_2850 DVU_2850 DVU_0215 DVU_0215 DVU_0213 DVU_0213
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0214tail/DNA circulation protein, putative; Identified by similarity to GP:19483753. (399 aa)    
Predicted Functional Partners:
DVU_0218
Tail protein, putative; Identified by similarity to GP:19483757.
 
    0.978
DVU_0217
Tail protein, putative; Identified by similarity to GP:19483756.
 
    0.973
DVU_2851
Tail protein, putative; Identified by similarity to GP:19483757.
 
    0.965
DVU_2853
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
 
    0.965
DVU_0216
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
 
    0.961
DVU_2852
Tail protein, putative; Identified by similarity to GP:19483756.
 
    0.958
DVU_2854
Tail protein, putative; Identified by similarity to SP:P08558.
    0.949
DVU_2850
Tail protein, putative; Identified by similarity to GP:19483737.
 
    0.928
DVU_0215
Tail protein, putative; Identified by similarity to SP:P08558.
    0.915
DVU_0213
Conserved domain protein.
 
     0.906
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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