STRINGSTRING
DVU_0220 DVU_0220 DVU_0221 DVU_0221 DVU_0219 DVU_0219 DVU_0218 DVU_0218 DVU_0217 DVU_0217 DVU_0216 DVU_0216 DVU_0215 DVU_0215 DVU_0222 DVU_0222 DVU_0213 DVU_0213 DVU_1497 DVU_1497 DVU_1502 DVU_1502
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0220Tail fiber protein, putative. (338 aa)    
Predicted Functional Partners:
DVU_0221
Tail fiber assembly protein, putative.
  
  
 0.826
DVU_0219
Tail protein, putative; Identified by similarity to GP:19483737.
  
  
 0.804
DVU_0218
Tail protein, putative; Identified by similarity to GP:19483757.
       0.781
DVU_0217
Tail protein, putative; Identified by similarity to GP:19483756.
       0.777
DVU_0216
Phage baseplate assembly protein V, putative; Identified by match to protein family HMM TIGR01644.
       0.775
DVU_0215
Tail protein, putative; Identified by similarity to SP:P08558.
       0.770
DVU_0222
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.744
DVU_0213
Conserved domain protein.
  
    0.664
DVU_1497
Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563.
  
   0.593
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
  
 
 0.589
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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