STRINGSTRING
DVU_0224 DVU_0224 DVU_0223 DVU_0223 DVU_3255 DVU_3255 DVU_0225 DVU_0225 DVU_1252 DVU_1252 hmcA hmcA DVU_0222 DVU_0222 DVU_0220 DVU_0220 DVU_0221 DVU_0221 DVU_0218 DVU_0218 DVU_0219 DVU_0219
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0224Conserved hypothetical protein; Identified by similarity to OMNI:CC3185. (131 aa)    
Predicted Functional Partners:
DVU_0223
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA0751.
  
 
 0.941
DVU_3255
Transcriptional regulator, CopG family; Identified by match to protein family HMM PF01402.
  
     0.728
DVU_0225
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.588
DVU_1252
Membrane protein, putative.
  
     0.584
hmcA
High-molecular-weight cytochrome C; HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates.
  
    0.473
DVU_0222
Hypothetical protein; Identified by Glimmer2; putative.
       0.438
DVU_0220
Tail fiber protein, putative.
  
    0.435
DVU_0221
Tail fiber assembly protein, putative.
  
    0.433
DVU_0218
Tail protein, putative; Identified by similarity to GP:19483757.
       0.425
DVU_0219
Tail protein, putative; Identified by similarity to GP:19483737.
       0.423
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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