STRINGSTRING
DVU_0241 DVU_0241 DVU_0242 DVU_0242 DVU_2104 DVU_2104 DVU_2103 DVU_2103 DVU_2108 DVU_2108 DVU_0665 DVU_0665 DVU_1468 DVU_1468 DVU_2984 DVU_2984 DVU_0240 DVU_0240 DVU_2138 DVU_2138 modB modB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0241Identified by similarity to SP:P10390; match to protein family HMM PF02579. (125 aa)    
Predicted Functional Partners:
DVU_0242
SEC-C motif domain protein; Identified by match to protein family HMM PF02810.
  
    0.834
DVU_2104
Iron-sulfur cluster-binding/ATPase domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00991.
 
  
 0.779
DVU_2103
Iron-sulfur cluster-binding/ATPase domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00991.
 
  
 0.767
DVU_2108
Identified by match to protein family HMM PF02579.
  
    0.739
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
  
  
 0.668
DVU_1468
peptidase/PDZ domain protein; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; Belongs to the peptidase S1C family.
   
  
 0.623
DVU_2984
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA00614; match to protein family HMM PF01937.
 
    0.567
DVU_0240
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.555
DVU_2138
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2602.
   
   0.446
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
  
 0.433
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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