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DVU_0245 DVU_0245 DVU_0249 DVU_0249 DVU_0247 DVU_0247 DVU_2619 DVU_2619 DVU_1842 DVU_1842 DVU_0246 DVU_0246 lepA lepA DVU_0250 DVU_0250 DVU_2210 DVU_2210 DVU_0400 DVU_0400 DVU_0590 DVU_0590
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0245Protein phosphatase, putative; Identified by match to protein family HMM PF00782. (369 aa)    
Predicted Functional Partners:
DVU_0249
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.
 
  
 0.899
DVU_0247
Response regulator; Identified by match to protein family HMM PF00072.
 
   
 0.871
DVU_2619
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03CP2311.
   
 0.865
DVU_1842
Lipoprotein, putative.
   
 0.859
DVU_0246
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein; Identified by similarity to SP:O29548; match to protein family HMM PF00391; match to protein family HMM PF01326.
 
   
 0.857
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
  
 
  0.812
DVU_0250
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.791
DVU_2210
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702.
 
 
 0.743
DVU_0400
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.717
DVU_0590
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.705
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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