Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0258 | DVU_0260 | DVU_0258 | DVU_0260 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Response regulator; Identified by match to protein family HMM PF00072. | 0.887 |
| DVU_0258 | DVU_0261 | DVU_0258 | DVU_0261 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Identified by match to protein family HMM PF00582. | 0.860 |
| DVU_0258 | DVU_0263 | DVU_0258 | DVU_0263 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Acidic cytochrome c3; Identified by similarity to SP:P94690. | 0.853 |
| DVU_0258 | DVU_0264 | DVU_0258 | DVU_0264 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Ferredoxin, 4Fe-4S, putative; Identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754. | 0.639 |
| DVU_0258 | DVU_0265 | DVU_0258 | DVU_0265 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Membrane protein, putative. | 0.800 |
| DVU_0258 | DVU_0266 | DVU_0258 | DVU_0266 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Hypothetical protein; Identified by Glimmer2; putative. | 0.830 |
| DVU_0258 | DVU_0270 | DVU_0258 | DVU_0270 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.941 |
| DVU_0258 | DVU_0531 | DVU_0258 | DVU_0531 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | Hmc operon protein 6; HMWC (high-molecular-weight cytochrome c precursor), ORF2, ORF3, ORF4, ORF5, ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates. ORF6 is a redox protein. | 0.699 |
| DVU_0258 | hmcA | DVU_0258 | DVU_0536 | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | High-molecular-weight cytochrome C; HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates. | 0.818 |
| DVU_0260 | DVU_0258 | DVU_0260 | DVU_0258 | Response regulator; Identified by match to protein family HMM PF00072. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.887 |
| DVU_0260 | DVU_0261 | DVU_0260 | DVU_0261 | Response regulator; Identified by match to protein family HMM PF00072. | Identified by match to protein family HMM PF00582. | 0.842 |
| DVU_0260 | DVU_0263 | DVU_0260 | DVU_0263 | Response regulator; Identified by match to protein family HMM PF00072. | Acidic cytochrome c3; Identified by similarity to SP:P94690. | 0.938 |
| DVU_0260 | DVU_0264 | DVU_0260 | DVU_0264 | Response regulator; Identified by match to protein family HMM PF00072. | Ferredoxin, 4Fe-4S, putative; Identified by similarity to SP:P33393; match to protein family HMM PF00037; match to protein family HMM PF02754. | 0.912 |
| DVU_0260 | DVU_0265 | DVU_0260 | DVU_0265 | Response regulator; Identified by match to protein family HMM PF00072. | Membrane protein, putative. | 0.759 |
| DVU_0260 | DVU_0266 | DVU_0260 | DVU_0266 | Response regulator; Identified by match to protein family HMM PF00072. | Hypothetical protein; Identified by Glimmer2; putative. | 0.726 |
| DVU_0260 | DVU_0267 | DVU_0260 | DVU_0267 | Response regulator; Identified by match to protein family HMM PF00072. | Hypothetical protein; Identified by Glimmer2; putative. | 0.595 |
| DVU_0260 | DVU_0270 | DVU_0260 | DVU_0270 | Response regulator; Identified by match to protein family HMM PF00072. | Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.842 |
| DVU_0261 | DVU_0258 | DVU_0261 | DVU_0258 | Identified by match to protein family HMM PF00582. | Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229. | 0.860 |
| DVU_0261 | DVU_0260 | DVU_0261 | DVU_0260 | Identified by match to protein family HMM PF00582. | Response regulator; Identified by match to protein family HMM PF00072. | 0.842 |
| DVU_0261 | DVU_0263 | DVU_0261 | DVU_0263 | Identified by match to protein family HMM PF00582. | Acidic cytochrome c3; Identified by similarity to SP:P94690. | 0.961 |
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