STRINGSTRING
DVU_0273 DVU_0273 DVU_0272 DVU_0272 bamD bamD DVU_1273 DVU_1273 cpoB-2 cpoB-2 DVU_1422 DVU_1422 DVU_0062 DVU_0062 DVU_0100 DVU_0100 lptD lptD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0273Conserved hypothetical protein; Identified by similarity to GP:21899254. (505 aa)    
Predicted Functional Partners:
DVU_0272
Hypothetical protein; Identified by Glimmer2; putative.
       0.651
bamD
Competence protein, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.558
DVU_1273
Bacterial type II/III secretion system protein; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958.
      
 0.551
cpoB-2
TPR domain protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
      
 0.551
DVU_1422
Identified by match to protein family HMM PF00691.
   
  
 0.528
DVU_0062
RND efflux system, outer membrane protein, NodT family; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
   
  
 0.520
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
      
 0.448
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
   
  
 0.403
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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