STRINGSTRING
DVU_0275 DVU_0275 DVU_1892 DVU_1892 DVU_0117 DVU_0117 DVU_0786 DVU_0786 DVU_0635 DVU_0635 DVU_1214 DVU_1214 DVU_0274 DVU_0274
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0275Identified by match to protein family HMM PF01522. (231 aa)    
Predicted Functional Partners:
DVU_1892
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.665
DVU_0117
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.659
DVU_0786
Penicillin-binding protein; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717.
 
    
 0.439
DVU_0635
Identified by match to protein family HMM PF02366.
  
  
 0.438
DVU_1214
Identified by match to protein family HMM PF02366.
  
  
 0.429
DVU_0274
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.411
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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