DVU_0279 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_0279

Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815. (568 aa)

Predicted Functional Partners:

cynT

0.939

acpP

0.756

DVU_0070

0.744

DVU_3144

0.731

DVU_2815

0.615

DVU_2562

0.588

fabG

0.528

FabG

0.521

sat

0.517

DVU_2041

0.515

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0070	DVU_0279	DVU_0070	DVU_0279	Identified by match to protein family HMM PF00149.	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	0.744
DVU_0070	DVU_2041	DVU_0070	DVU_2041	Identified by match to protein family HMM PF00149.	Conserved hypothetical protein; Identified by similarity to GP:20095150.	0.755
DVU_0070	DVU_3144	DVU_0070	DVU_3144	Identified by match to protein family HMM PF00149.	Cytochrome c family protein.	0.436
DVU_0070	FabG	DVU_0070	DVU_3137	Identified by match to protein family HMM PF00149.	Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.	0.749
DVU_0070	fabG	DVU_0070	DVU_1206	Identified by match to protein family HMM PF00149.	3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.749
DVU_0279	DVU_0070	DVU_0279	DVU_0070	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Identified by match to protein family HMM PF00149.	0.744
DVU_0279	DVU_2041	DVU_0279	DVU_2041	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Conserved hypothetical protein; Identified by similarity to GP:20095150.	0.515
DVU_0279	DVU_2562	DVU_0279	DVU_2562	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Acyl carrier protein, putative; Identified by similarity to SP:P20804.	0.588
DVU_0279	DVU_2815	DVU_0279	DVU_2815	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Outer membrane efflux protein; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.	0.615
DVU_0279	DVU_3144	DVU_0279	DVU_3144	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Cytochrome c family protein.	0.731
DVU_0279	FabG	DVU_0279	DVU_3137	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.	0.521
DVU_0279	acpP	DVU_0279	DVU_1205	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.756
DVU_0279	cynT	DVU_0279	DVU_1777	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	0.939
DVU_0279	fabG	DVU_0279	DVU_1206	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.528
DVU_0279	sat	DVU_0279	DVU_1295	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	Sulfate adenylyltransferase; Identified by similarity to SP:P56864; match to protein family HMM PF01747; match to protein family HMM TIGR00339.	0.517
DVU_2041	DVU_0070	DVU_2041	DVU_0070	Conserved hypothetical protein; Identified by similarity to GP:20095150.	Identified by match to protein family HMM PF00149.	0.755
DVU_2041	DVU_0279	DVU_2041	DVU_0279	Conserved hypothetical protein; Identified by similarity to GP:20095150.	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	0.515
DVU_2562	DVU_0279	DVU_2562	DVU_0279	Acyl carrier protein, putative; Identified by similarity to SP:P20804.	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	0.588
DVU_2562	acpP	DVU_2562	DVU_1205	Acyl carrier protein, putative; Identified by similarity to SP:P20804.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.900
DVU_2815	DVU_0279	DVU_2815	DVU_0279	Outer membrane efflux protein; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.	Identified by similarity to SP:P40877; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.	0.615

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About