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DVU_0300 DVU_0300 DVU_0299 DVU_0299 DVU_2947 DVU_2947 DVU_2272 DVU_2272 DVU_2824 DVU_2824 DVU_0665 DVU_0665 poR poR DVU_0301 DVU_0301 DVU_2405 DVU_2405 DVU_0353 DVU_0353 DVU_2396 DVU_2396
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0300Radical SAM domain protein; Identified by match to protein family HMM PF04055. (245 aa)    
Predicted Functional Partners:
DVU_0299
Anaerobic ribonucleoside-triphosphate reductase, putative; Identified by similarity to GP:4127320; match to protein family HMM PF03477.
  
 0.984
DVU_2947
Anaerobic ribonucleoside-triphosphate reductase, putative; Identified by similarity to GP:4127320; match to protein family HMM PF03477.
  
 0.910
DVU_2272
Formate acetyltransferase, putative; Identified by similarity to SP:P32674; match to protein family HMM PF01228; match to protein family HMM PF02901.
  
  
 0.644
DVU_2824
Formate acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901.
  
  
 0.644
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
  
  
 0.575
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
  
 0.524
DVU_0301
Hypothetical protein; Identified by Glimmer2; putative.
       0.465
DVU_2405
Alcohol dehydrogenase, iron-containing; Identified by similarity to GP:2393887; match to protein family HMM PF00465.
  
  
 0.433
DVU_0353
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
  
  
 0.430
DVU_2396
Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:P31005; match to protein family HMM PF00465.
  
  
 0.430
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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