Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
DVU_0302 | DVU_0304 | Chemotaxis protein CheX, putative; Identified by similarity to GP:3493637. | Hypothetical protein; Identified by Glimmer2; putative. | 0.521 |
DVU_0303 | DVU_0304 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.971 |
DVU_0303 | DVU_0305 | Hypothetical protein; Identified by Glimmer2; putative. | Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037. | 0.441 |
DVU_0304 | DVU_0302 | Hypothetical protein; Identified by Glimmer2; putative. | Chemotaxis protein CheX, putative; Identified by similarity to GP:3493637. | 0.521 |
DVU_0304 | DVU_0303 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.971 |
DVU_0304 | DVU_0305 | Hypothetical protein; Identified by Glimmer2; putative. | Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037. | 0.499 |
DVU_0304 | DVU_0359 | Hypothetical protein; Identified by Glimmer2; putative. | HesB-like domain. | 0.425 |
DVU_0304 | DVU_0362 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA01111. | 0.436 |
DVU_0304 | DVU_0584 | Hypothetical protein; Identified by Glimmer2; putative. | Transposase, putative; Identified by similarity to OMNI:NTL01NM00438. | 0.430 |
DVU_0304 | DVU_0907 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443. | 0.612 |
DVU_0304 | DVU_1382 | Hypothetical protein; Identified by Glimmer2; putative. | HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family. | 0.514 |
DVU_0304 | DVU_1724 | Hypothetical protein; Identified by Glimmer2; putative. | Phage uncharacterized protein, putative. | 0.462 |
DVU_0304 | DVU_2077 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130. | 0.513 |
DVU_0305 | DVU_0303 | Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037. | Hypothetical protein; Identified by Glimmer2; putative. | 0.441 |
DVU_0305 | DVU_0304 | Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037. | Hypothetical protein; Identified by Glimmer2; putative. | 0.499 |
DVU_0359 | DVU_0304 | HesB-like domain. | Hypothetical protein; Identified by Glimmer2; putative. | 0.425 |
DVU_0359 | DVU_2077 | HesB-like domain. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130. | 0.590 |
DVU_0362 | DVU_0304 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA01111. | Hypothetical protein; Identified by Glimmer2; putative. | 0.436 |
DVU_0362 | DVU_1382 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA01111. | HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family. | 0.456 |
DVU_0584 | DVU_0304 | Transposase, putative; Identified by similarity to OMNI:NTL01NM00438. | Hypothetical protein; Identified by Glimmer2; putative. | 0.430 |
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