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DVU_0352 DVU_0352 DVU_0351 DVU_0351 spsF spsF DVU_0353 DVU_0353 DVU_0349 DVU_0349 DVU_0347 DVU_0347 rfbB rfbB DVU_0348 DVU_0348 DVU_0072 DVU_0072 DVU_0346 DVU_0346 rfbA rfbA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0352Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family. (393 aa)    
Predicted Functional Partners:
DVU_0351
Cytidine 5'monophosphate N-acetylneuraminic acid synthetase/polysaccharide biosynthesis protein; Identified by similarity to SP:P39627; similar to GP:4741793.
 
  
 0.955
spsF
Spore coat polysaccharide biosynthesis protein spsF; Identified by match to protein family HMM PF02348.
 
  
 0.880
DVU_0353
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
 
  
 0.798
DVU_0349
Identified by match to protein family HMM PF01354; match to protein family HMM PF03102.
 
  
 0.795
DVU_0347
Transferase, hexapeptide repeat family; Identified by match to protein family HMM PF00132.
  
  
 0.777
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.684
DVU_0348
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.645
DVU_0072
Glucose-1-phosphate cytidylyl-transferase; Identified by similarity to SP:P26396; match to protein family HMM PF00483.
  
  
 0.622
DVU_0346
Membrane protein, putative.
  
  
 0.593
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.551
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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