Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
DVU_0298 | DVU_0359 | Hypothetical protein; Identified by Glimmer2; putative. | HesB-like domain. | 0.654 |
DVU_0298 | DVU_3274 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.626 |
DVU_0359 | DVU_0298 | HesB-like domain. | Hypothetical protein; Identified by Glimmer2; putative. | 0.654 |
DVU_0359 | DVU_0664 | HesB-like domain. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.782 |
DVU_0359 | DVU_0665 | HesB-like domain. | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | 0.984 |
DVU_0359 | DVU_1021 | HesB-like domain. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA4295; match to protein family HMM PF01458. | 0.663 |
DVU_0359 | DVU_1022 | HesB-like domain. | SUF system FeS assembly ATPase SufC, putative; Identified by similarity to OMNI:NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978. | 0.692 |
DVU_0359 | DVU_2077 | HesB-like domain. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130. | 0.590 |
DVU_0359 | DVU_2427 | HesB-like domain. | Hypothetical protein; Identified by Glimmer2; putative. | 0.586 |
DVU_0359 | DVU_2553 | HesB-like domain. | Identified by match to protein family HMM PF01106. | 0.641 |
DVU_0359 | DVU_3273 | HesB-like domain. | Conserved hypothetical protein; Identified by similarity to GP:944973. | 0.669 |
DVU_0359 | DVU_3274 | HesB-like domain. | Hypothetical protein; Identified by Glimmer2; putative. | 0.638 |
DVU_0664 | DVU_0359 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | HesB-like domain. | 0.782 |
DVU_0664 | DVU_0665 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | 0.999 |
DVU_0664 | DVU_1021 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA4295; match to protein family HMM PF01458. | 0.478 |
DVU_0664 | DVU_1022 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | SUF system FeS assembly ATPase SufC, putative; Identified by similarity to OMNI:NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978. | 0.411 |
DVU_0664 | DVU_2427 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | Hypothetical protein; Identified by Glimmer2; putative. | 0.507 |
DVU_0664 | DVU_2553 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | Identified by match to protein family HMM PF01106. | 0.661 |
DVU_0665 | DVU_0359 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | HesB-like domain. | 0.984 |
DVU_0665 | DVU_0664 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.999 |
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