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DVU_0410 DVU_0410 DVU_2444 DVU_2444 csrA csrA DVU_2082 DVU_2082 DVU_0318 DVU_0318 DVU_0409 DVU_0409 fliW fliW DVU_1441 DVU_1441 DVU_2445 DVU_2445 DVU_0411 DVU_0411 DVU_0412 DVU_0412
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0410Hypothetical protein; Identified by Glimmer2; putative. (201 aa)    
Predicted Functional Partners:
DVU_2444
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
   0.889
csrA
Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
  
   0.874
DVU_2082
Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
   0.870
DVU_0318
TPR domain protein; Identified by match to protein family HMM PF00515.
   
    0.846
DVU_0409
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.823
fliW
Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. Belongs to the FliW family.
  
   0.818
DVU_1441
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
   0.812
DVU_2445
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.557
DVU_0411
Identified by match to protein family HMM PF01075.
       0.507
DVU_0412
Potassium uptake protein TrkA, putative; Identified by similarity to GP:3288678; match to protein family HMM PF02080; match to protein family HMM PF02254.
       0.449
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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