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nspC nspC lys1 lys1 DVU_0421 DVU_0421 DVU_2495 DVU_2495 DVU_0378 DVU_0378 trx trx speA speA guaA guaA DVU_2975 DVU_2975 ribD ribD DVU_0462 DVU_0462
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
nspCCarboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. (390 aa)    
Predicted Functional Partners:
lys1
Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435.
 
  
 0.909
DVU_0421
Agmatinase, putative; Identified by similarity to OMNI:NTL01SS00132; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
 
  
 0.667
DVU_2495
Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
  
  
 0.649
DVU_0378
Thioredoxin, putative; Identified by similarity to SP:P80579.
   
 
 0.602
trx
Thioredoxin; Identified by similarity to SP:P06544; match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
   
 
 0.601
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
  
 0.574
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.562
DVU_2975
Hydrolase, putative; Identified by match to protein family HMM PF04307.
   
    0.557
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.517
DVU_0462
Chorismate mutase/prephenate dehydratase; Identified by similarity to SP:P07022; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807.
     
 0.515
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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