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DVU_0433 DVU_0433 DVU_0429 DVU_0429 DVU_0432 DVU_0432 DVU_0431 DVU_0431 DVU_0434 DVU_0434 DVU_0430 DVU_0430 DVU_2288 DVU_2288 DVU_2291 DVU_2291 DVU_2286 DVU_2286 poR poR DVU_2289 DVU_2289
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0433Ech hydrogenase, subunit EchB, putative; Identified by similarity to GP:3005968; match to protein family HMM PF00146. (282 aa)    
Predicted Functional Partners:
DVU_0429
Ech hydrogenase, subunit EchF, putative; Identified by similarity to GP:3005972; match to protein family HMM PF00037.
 
 
 0.996
DVU_0432
Ech hydrogenase, subunit EchC, putative; Identified by similarity to GP:3005969; Belongs to the complex I 20 kDa subunit family.
 
 
 0.995
DVU_0431
Ech hydrogenase, subunit EchD, putative; Identified by similarity to GP:3005970.
 
 
 0.992
DVU_0434
Ech hydrogenase, subunit EchA, putative; Identified by similarity to GP:3005967; match to protein family HMM PF00361.
  
 0.987
DVU_0430
Ech hydrogenase, subunit EchE, putative; Identified by similarity to GP:3005971; match to protein family HMM PF00346.
 
 
 0.985
DVU_2288
Hydrogenase, CooL subunit, putative; Identified by similarity to GP:1515468; match to protein family HMM PF01058.
 
 
 0.977
DVU_2291
Carbon monoxide-induced hydrogenase CooH, putative; Identified by similarity to SP:P31895; match to protein family HMM PF00346.
 
 
 0.958
DVU_2286
Hydrogenase, CooM subunit, putative; Identified by similarity to GP:1515466; match to protein family HMM PF00361.
 
 
 0.925
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
 
 0.860
DVU_2289
Hydrogenase, CooX subunit, putative; Identified by match to protein family HMM PF00037.
 
 
 0.853
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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