STRINGSTRING
DVU_0456 DVU_0456 DVU_0455 DVU_0455 DVU_0333 DVU_0333 DVU_1460 DVU_1460 DVU_0298 DVU_0298 DVU_2210 DVU_2210 infB infB DVU_0454 DVU_0454 DVU_2460 DVU_2460 DVU_3221 DVU_3221 bamA bamA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0456DHH family protein. (335 aa)    
Predicted Functional Partners:
DVU_0455
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.744
DVU_0333
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.717
DVU_1460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.587
DVU_0298
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.564
DVU_2210
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF02624; match to protein family HMM TIGR00702.
  
     0.560
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.541
DVU_0454
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.528
DVU_2460
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.505
DVU_3221
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
    0.501
bamA
Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.499
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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