STRINGSTRING
DVU_0475 DVU_0475 DVU_0476 DVU_0476 DVU_0474 DVU_0474 DVU_0472 DVU_0472 DVU_0473 DVU_0473 icd icd
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0475Membrane protein, putative, truncation. (146 aa)    
Predicted Functional Partners:
DVU_0476
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
DVU_0474
ISDvu4, transposase; Identified by similarity to OMNI:SO3543; match to protein family HMM PF00665.
       0.520
DVU_0472
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.470
DVU_0473
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.469
icd
Isocitrate dehydrogenase, NADP-dependent; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183.
       0.424
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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