STRINGSTRING
DVU_0479 DVU_0479 DVU_0478 DVU_0478 DVU_0480 DVU_0480 rnfA rnfA DVU_0449 DVU_0449 DVU_1450 DVU_1450 DVU_0126 DVU_0126 DVU_0815 DVU_0815 DVU_2412 DVU_2412 DVU_3324 DVU_3324 rnfB rnfB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0479Serine/threonine protein kinase, putative; Identified by similarity to SP:P54736; match to protein family HMM PF00069. (499 aa)    
Predicted Functional Partners:
DVU_0478
Identified by match to protein family HMM PF00149.
  
 0.764
DVU_0480
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.694
rnfA
Electron transport complex protein RnfA, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.597
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.568
DVU_1450
Anti-sigma factor, putative; Identified by similarity to SP:P70878; match to protein family HMM PF02518.
    
 
 0.551
DVU_0126
ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.
  
  
 0.544
DVU_0815
AsmA family protein; Identified by similarity to SP:P28249; match to protein family HMM PF05170.
 
    0.523
DVU_2412
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 
 0.516
DVU_3324
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 0.493
rnfB
Iron-sulfur cluster-binding protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
    0.486
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.