STRINGSTRING
DVU_0491 DVU_0491 DVU_0940 DVU_0940 DVU_0449 DVU_0449 DVU_1959 DVU_1959 poR poR DVU_0416 DVU_0416 DVU_0355 DVU_0355 DVU_1862 DVU_1862 DVU_1805 DVU_1805 DVU_1414 DVU_1414 DVU_2968 DVU_2968
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0491HDIG domain protein; Identified by similarity to OMNI:NTL01RS2515; match to protein family HMM PF01966; match to protein family HMM TIGR00277. (401 aa)    
Predicted Functional Partners:
DVU_0940
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 0.906
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.588
DVU_1959
EAL domain/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.544
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
   0.502
DVU_0416
GGDEF domain protein; Identified by similarity to GP:1119215; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.464
DVU_0355
Sensory box/GGDEF domain protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 0.463
DVU_1862
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.433
DVU_1805
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 0.431
DVU_1414
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
 0.417
DVU_2968
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
     0.402
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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