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DVU_0518 DVU_0518 DVU_0519 DVU_0519 DVU_0520 DVU_0520 csrA csrA DVU_0517 DVU_0517 fliW fliW flgH flgH flgI flgI DVU_0514 DVU_0514 flgG flgG DVU_0512 DVU_0512
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0518Hypothetical protein; Identified by Glimmer2; putative. (154 aa)    
Predicted Functional Partners:
DVU_0519
Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
  
    0.818
DVU_0520
Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012.
  
    0.790
csrA
Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
  
    0.760
DVU_0517
Peptidase, M23/M37 family; Identified by similarity to SP:P75942; match to protein family HMM PF01551.
  
    0.759
fliW
Conserved hypothetical protein; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. Belongs to the FliW family.
  
    0.759
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
    0.747
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
    0.745
DVU_0514
Identified by match to protein family HMM PF03240.
  
    0.693
flgG
Flagellar basal-body rod protein FlgG; Identified by similarity to SP:P16439; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
  
    0.590
DVU_0512
Flagellar basal-body rod protein, putative; Identified by similarity to SP:P75939; match to protein family HMM PF00460; Belongs to the flagella basal body rod proteins family.
  
    0.477
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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