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DVU_0540 DVU_0540 DVU_0539 DVU_0539 DVU_3062 DVU_3062 DVU_0622 DVU_0622 DVU_0270 DVU_0270 phoB phoB DVU_3215 DVU_3215 DVU_2966 DVU_2966 cheY-2 cheY-2 DVU_0581 DVU_0581 DVU_0247 DVU_0247
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0540Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (803 aa)    
Predicted Functional Partners:
DVU_0539
Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
 
 
 0.876
DVU_3062
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
0.855
DVU_0622
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
0.852
DVU_0270
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 
0.779
phoB
Phosphate regulon transcriptional regulator PhoB; Identified by similarity to SP:P23620; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.773
DVU_3215
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.754
DVU_2966
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.753
cheY-2
Chemotaxis protein CheY; Identified by similarity to GP:510670; match to protein family HMM PF00072.
 
 
 0.751
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
 
   0.737
DVU_0247
Response regulator; Identified by match to protein family HMM PF00072.
  
 
   0.710
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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