Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
DVU_0539 | DVU_0540 | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | 0.876 |
DVU_0539 | DVU_0541 | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | Lipoprotein, putative. | 0.530 |
DVU_0539 | DVU_0542 | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | Universal stress protein family; Identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582. | 0.607 |
DVU_0539 | DVU_0543 | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | Conserved hypothetical protein. | 0.497 |
DVU_0539 | DVU_0544 | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | Hypothetical protein; Identified by Glimmer2; putative. | 0.442 |
DVU_0539 | DVU_0545 | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582. | 0.455 |
DVU_0540 | DVU_0539 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | 0.876 |
DVU_0540 | DVU_0541 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | Lipoprotein, putative. | 0.518 |
DVU_0540 | DVU_0542 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | Universal stress protein family; Identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582. | 0.517 |
DVU_0540 | DVU_0543 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | Conserved hypothetical protein. | 0.491 |
DVU_0540 | DVU_0544 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | Hypothetical protein; Identified by Glimmer2; putative. | 0.444 |
DVU_0540 | DVU_0545 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582. | 0.455 |
DVU_0541 | DVU_0539 | Lipoprotein, putative. | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | 0.530 |
DVU_0541 | DVU_0540 | Lipoprotein, putative. | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | 0.518 |
DVU_0541 | DVU_0542 | Lipoprotein, putative. | Universal stress protein family; Identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582. | 0.777 |
DVU_0541 | DVU_0543 | Lipoprotein, putative. | Conserved hypothetical protein. | 0.717 |
DVU_0541 | DVU_0544 | Lipoprotein, putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.645 |
DVU_0541 | DVU_0545 | Lipoprotein, putative. | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582. | 0.646 |
DVU_0542 | DVU_0539 | Universal stress protein family; Identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582. | Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199. | 0.607 |
DVU_0542 | DVU_0540 | Universal stress protein family; Identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582. | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. | 0.517 |
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