DVU_0543 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_0543

Conserved hypothetical protein. (369 aa)

Predicted Functional Partners:

DVU_0542

0.719

DVU_0545

0.718

DVU_0541

0.717

DVU_0544

0.710

DVU_0539

0.497

DVU_0540

0.491

DVU_0132

0.473

DVU_0133

0.420

DVU_3299

0.411

DVU_0251

0.409

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DVU_0132	DVU_0133	Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.	Hypothetical protein; Identified by Glimmer2; putative.	0.978
DVU_0132	DVU_0251	Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.	Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925.	0.652
DVU_0132	DVU_0543	Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.	Conserved hypothetical protein.	0.473
DVU_0133	DVU_0132	Hypothetical protein; Identified by Glimmer2; putative.	Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.	0.978
DVU_0133	DVU_0251	Hypothetical protein; Identified by Glimmer2; putative.	Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925.	0.701
DVU_0133	DVU_0543	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.420
DVU_0133	DVU_3299	Hypothetical protein; Identified by Glimmer2; putative.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.786
DVU_0251	DVU_0132	Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925.	Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.	0.652
DVU_0251	DVU_0133	Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925.	Hypothetical protein; Identified by Glimmer2; putative.	0.701
DVU_0251	DVU_0543	Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925.	Conserved hypothetical protein.	0.409
DVU_0251	DVU_3299	Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925.	Membrane protein, putative; Identified by match to protein family HMM PF01925.	0.495
DVU_0539	DVU_0540	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.876
DVU_0539	DVU_0541	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Lipoprotein, putative.	0.530
DVU_0539	DVU_0542	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Universal stress protein family; Identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582.	0.607
DVU_0539	DVU_0543	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Conserved hypothetical protein.	0.497
DVU_0539	DVU_0544	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Hypothetical protein; Identified by Glimmer2; putative.	0.442
DVU_0539	DVU_0545	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00980; match to protein family HMM PF00582.	0.455
DVU_0540	DVU_0539	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Sigma-54 dependent DNA-binding response regulator; Identified by similarity to SP:P21712; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.	0.876
DVU_0540	DVU_0541	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Lipoprotein, putative.	0.518
DVU_0540	DVU_0542	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Universal stress protein family; Identified by similarity to OMNI:NTL02MA3200; match to protein family HMM PF00582.	0.517

page 1 of 3

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About