STRINGSTRING
DVU_0550 DVU_0550 DVU_0549 DVU_0549 DVU_0714 DVU_0714 livM livM DVU_0548 DVU_0548 DVU_0547 DVU_0547 DVU_0713 DVU_0713 livH livH DVU_0738 DVU_0738 DVU_0712 DVU_0712 DVU_2744 DVU_2744
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0550High-affinity branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005. (262 aa)    
Predicted Functional Partners:
DVU_0549
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P21628; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
DVU_0714
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
livM
High-affinity branched chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
DVU_0548
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.995
DVU_0547
Branched-chain amino acid transport system substrate-binding protein; Identified by match to protein family HMM PF01094.
 
 
 0.985
DVU_0713
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.984
livH
High-affinity branched-chain amino acid ABC ransporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.983
DVU_0738
Substrate-binding protein, putative; Identified by match to protein family HMM PF01094.
 
 
 0.970
DVU_0712
Amino acid ABC transporter, periplasmic-binding protein; Identified by match to protein family HMM PF01094.
 
 
 0.968
DVU_2744
High-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein; Identified by match to protein family HMM PF01094.
 
 
 0.968
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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