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DVU_0560 DVU_0560 DVU_0074 DVU_0074 DVU_3015 DVU_3015 DVU_0561 DVU_0561 DVU_0559 DVU_0559 DVU_0938 DVU_0938 glgB glgB ugd ugd DVU_0346 DVU_0346 rfbC rfbC rfbB rfbB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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DVU_0560Conserved domain protein; Identified by similarity to OMNI:MT0861. (164 aa)    
Predicted Functional Partners:
DVU_0074
Polysaccharide biosynthesis domain protein; Identified by similarity to SP:P39631.
 
  
 0.821
DVU_3015
Conserved domain protein; Identified by similarity to OMNI:NT01MC1323.
 
     0.697
DVU_0561
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
    0.653
DVU_0559
Lipoprotein, putative.
       0.569
DVU_0938
Isoamylase N-terminal domain protein.
   
 0.554
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.554
ugd
UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.503
DVU_0346
Membrane protein, putative.
  
  
 0.493
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.481
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.481
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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