STRINGSTRING
DVU_0562 DVU_0562 DVU_0563 DVU_0563 DVU_2010 DVU_2010 DVU_0561 DVU_0561 DVU_0560 DVU_0560
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0562ISD1, transposase OrfA; Identified by similarity to GP:2645860; match to protein family HMM PF01527. (88 aa)    
Predicted Functional Partners:
DVU_0563
ISD1, transposase OrfB; Identified by similarity to GP:2645861; match to protein family HMM PF00665.
  
 0.987
DVU_2010
ISD1, transposase OrfB; Identified by match to protein family HMM PF00665.
  
 0.957
DVU_0561
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
    0.715
DVU_0560
Conserved domain protein; Identified by similarity to OMNI:MT0861.
  
    0.441
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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