STRINGSTRING
DVU_0567 DVU_0567 DVU_0079 DVU_0079 DVU_0525 DVU_0525 DVU_0102 DVU_0102 DVU_0099 DVU_0099 DVU_0949 DVU_0949 DVU_0100 DVU_0100 DVU_0568 DVU_0568 DVU_0566 DVU_0566 gap-1 gap-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
DVU_0567Identified by match to protein family HMM PF03741. (359 aa)    
Predicted Functional Partners:
DVU_0079
ZIP zinc transporter family protein; Identified by similarity to SP:Q06916; match to protein family HMM PF02535.
  
  
 0.598
DVU_0525
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
     
 0.598
DVU_0102
Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297.
     
 0.595
DVU_0099
TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
      
 0.586
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
      
 0.586
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
      
 0.553
DVU_0568
Rhodanese-like domain protein; Identified by similarity to OMNI:NTL03CP2070; match to protein family HMM PF00581; Belongs to the SelU family.
  
    0.510
DVU_0566
GAF domain protein; Identified by match to protein family HMM PF01590.
       0.452
gap-1
Glyceraldehyde 3-phosphate dehydrogenase; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.433
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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