STRINGSTRING
DVU_0583 DVU_0583 DVU_0582 DVU_0582 DVU_0581 DVU_0581 DVU_0584 DVU_0584 livM livM DVU_0549 DVU_0549 DVU_0714 DVU_0714 livG livG DVU_0548 DVU_0548 DVU_0550 DVU_0550 DVU_0715 DVU_0715
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0583Lipoprotein, putative; Identified by match to protein family HMM PF01094. (423 aa)    
Predicted Functional Partners:
DVU_0582
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
  
 0.926
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
  
    0.705
DVU_0584
Transposase, putative; Identified by similarity to OMNI:NTL01NM00438.
 
    0.687
livM
High-affinity branched chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.667
DVU_0549
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P21628; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.657
DVU_0714
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.594
livG
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
  
 0.591
DVU_0548
High-affinity branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P08340; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.571
DVU_0550
High-affinity branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
  
 0.570
DVU_0715
Branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
  
 0.561
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.