Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0598 | DVU_0599 | DVU_0598 | DVU_0599 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | 0.763 |
| DVU_0598 | acs | DVU_0598 | DVU_0748 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.562 |
| DVU_0598 | ileS | DVU_0598 | DVU_1927 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). | 0.597 |
| DVU_0598 | leuA | DVU_0598 | DVU_2981 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.585 |
| DVU_0598 | leuC | DVU_0598 | DVU_2982 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | 3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the aconitase/IPM isomerase family. LeuC type 2 subfamily. | 0.594 |
| DVU_0598 | leuD | DVU_0598 | DVU_2983 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | 3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.580 |
| DVU_0598 | lytS | DVU_0598 | DVU_0597 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518. | 0.597 |
| DVU_0598 | pspA | DVU_0598 | DVU_2988 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | Identified by match to protein family HMM PF04012. | 0.567 |
| DVU_0598 | putA | DVU_0598 | DVU_3319 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.850 |
| DVU_0598 | trmE | DVU_0598 | DVU_1079 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.702 |
| DVU_0599 | DVU_0598 | DVU_0599 | DVU_0598 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | 0.763 |
| DVU_0599 | acs | DVU_0599 | DVU_0748 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.560 |
| DVU_0599 | ileS | DVU_0599 | DVU_1927 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). | 0.470 |
| DVU_0599 | leuC | DVU_0599 | DVU_2982 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | 3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the aconitase/IPM isomerase family. LeuC type 2 subfamily. | 0.462 |
| DVU_0599 | lytS | DVU_0599 | DVU_0597 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | Regulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518. | 0.468 |
| DVU_0599 | putA | DVU_0599 | DVU_3319 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.850 |
| DVU_0599 | trmE | DVU_0599 | DVU_1079 | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.584 |
| acs | DVU_0598 | DVU_0748 | DVU_0598 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | 0.562 |
| acs | DVU_0599 | DVU_0748 | DVU_0599 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. | 0.560 |
| acs | leuA | DVU_0748 | DVU_2981 | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.914 |
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