DVU_0633 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_0633

Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. (807 aa)

Predicted Functional Partners:

DVU_2655

0.922

DVU_0632

0.800

DVU_0634

0.798

DVU_0635

0.757

DVU_3240

0.697

DVU_1347

0.692

DVU_0517

0.689

rodA

0.676

DVU_0786

0.676

DVU_3395

0.652

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0517	DVU_0633	DVU_0517	DVU_0633	Peptidase, M23/M37 family; Identified by similarity to SP:P75942; match to protein family HMM PF01551.	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	0.689
DVU_0632	DVU_0633	DVU_0632	DVU_0633	Identified by match to protein family HMM PF00190.	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	0.800
DVU_0632	DVU_0634	DVU_0632	DVU_0634	Identified by match to protein family HMM PF00190.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
DVU_0632	DVU_0635	DVU_0632	DVU_0635	Identified by match to protein family HMM PF00190.	Identified by match to protein family HMM PF02366.	0.777
DVU_0633	DVU_0517	DVU_0633	DVU_0517	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Peptidase, M23/M37 family; Identified by similarity to SP:P75942; match to protein family HMM PF01551.	0.689
DVU_0633	DVU_0632	DVU_0633	DVU_0632	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Identified by match to protein family HMM PF00190.	0.800
DVU_0633	DVU_0634	DVU_0633	DVU_0634	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Hypothetical protein; Identified by Glimmer2; putative.	0.798
DVU_0633	DVU_0635	DVU_0633	DVU_0635	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Identified by match to protein family HMM PF02366.	0.757
DVU_0633	DVU_0786	DVU_0633	DVU_0786	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Penicillin-binding protein; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717.	0.676
DVU_0633	DVU_1347	DVU_0633	DVU_1347	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.692
DVU_0633	DVU_2655	DVU_0633	DVU_2655	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.922
DVU_0633	DVU_3240	DVU_0633	DVU_3240	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.697
DVU_0633	DVU_3395	DVU_0633	DVU_3395	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.652
DVU_0633	rodA	DVU_0633	DVU_0785	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.676
DVU_0634	DVU_0632	DVU_0634	DVU_0632	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF00190.	0.773
DVU_0634	DVU_0633	DVU_0634	DVU_0633	Hypothetical protein; Identified by Glimmer2; putative.	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	0.798
DVU_0634	DVU_0635	DVU_0634	DVU_0635	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF02366.	0.768
DVU_0635	DVU_0632	DVU_0635	DVU_0632	Identified by match to protein family HMM PF02366.	Identified by match to protein family HMM PF00190.	0.777
DVU_0635	DVU_0633	DVU_0635	DVU_0633	Identified by match to protein family HMM PF02366.	Penicillin-binding protein; Identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	0.757
DVU_0635	DVU_0634	DVU_0635	DVU_0634	Identified by match to protein family HMM PF02366.	Hypothetical protein; Identified by Glimmer2; putative.	0.768

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About