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DVU_0649 DVU_0649 DVU_0647 DVU_0647 DVU_0648 DVU_0648 DVU_0103 DVU_0103 DVU_2021 DVU_2021 DVU_1764 DVU_1764 cobI cobI cbiKp cbiKp DVU_2383 DVU_2383 DVU_0734 DVU_0734 DVU_3072 DVU_3072
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DVU_0649Iron compound ABC transporter, permease protein; Identified by similarity to PIR:S54438; match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (351 aa)    
Predicted Functional Partners:
DVU_0647
Iron compound ABC transporter, periplasmic iron compount-binding protein, putative; Identified by similarity to OMNI:DRB0007; match to protein family HMM PF01497.
 
 
 0.999
DVU_0648
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to SP:P07821; match to protein family HMM PF00005.
 
 0.999
DVU_0103
Cation ABC transporter, ATP-binding protein, putative; Identified by similarity to OMNI:NTL02SC0434; match to protein family HMM PF00005.
 
 0.972
DVU_2021
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.950
DVU_1764
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1482.
  
 
 0.949
cobI
Precorrin-2 C20-methyltransferase; Identified by similarity to SP:Q05593; match to protein family HMM PF00590; match to protein family HMM TIGR01467; Belongs to the precorrin methyltransferase family.
  
  
 0.808
cbiKp
Chelatase, putative; Catalyzes the insertion of Co(2+) into sirohydrochlorin. To a lesser extent, is also able to insert Fe(2+) into sirohydrochlorin, yielding siroheme. Its periplasmic location means that it cannot participate in cobalamin biosynthesis and its genomic environment suggests it is likely to be associated with a heme or metal transport system.
  
    0.793
DVU_2383
tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593.
  
  
 0.582
DVU_0734
Uroporphyrinogen III synthase/methyltransferase; Identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01369; match to protein family HMM TIGR01469.
  
  
 0.576
DVU_3072
ABC transporter, permease protein, putative; Identified by similarity to SP:P76224; match to protein family HMM PF00528.
   
  
 0.513
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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