STRINGSTRING
DVU_0654 DVU_0654 DVU_0653 DVU_0653 DVU_0021 DVU_0021 DVU_0357 DVU_0357 DVU_0655 DVU_0655 DVU_2997 DVU_2997 DVU_0656 DVU_0656 ackA ackA DVU_1685 DVU_1685 rlmN rlmN DVU_1768 DVU_1768
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
DVU_0654Peptidase, U32 family; Identified by match to protein family HMM PF01136. (408 aa)    
Predicted Functional Partners:
DVU_0653
Sigma-54 dependent transcriptional regulator, putative/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
  
    0.730
DVU_0021
Conserved domain protein; Identified by similarity to OMNI:AF0308.
 
  
 0.693
DVU_0357
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML5790.
 
  
 0.684
DVU_0655
PHP domain protein; Identified by match to protein family HMM PF02231.
  
    0.680
DVU_2997
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.625
DVU_0656
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02SC2888; match to protein family HMM PF03966; Belongs to the UPF0434 family.
  
    0.469
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
    0.468
DVU_1685
Conserved hypothetical protein TIGR00046; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
    0.460
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
 
 
 0.454
DVU_1768
Identified by match to protein family HMM TIGR00231.
  
  
 0.415
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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