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DVU_0737 DVU_0737 DVU_0888 DVU_0888 glnB-1 glnB-1 DVU_0271 DVU_0271 DVU_0738 DVU_0738 DVU_0482 DVU_0482 DVU_3215 DVU_3215 DVU_1285 DVU_1285 DVU_2966 DVU_2966 DVU_0581 DVU_0581 DVU_0140 DVU_0140
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0737Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229. (746 aa)    
Predicted Functional Partners:
DVU_0888
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.824
glnB-1
Nitrogen regulatory protein P-II; Identified by similarity to SP:P21193; match to protein family HMM PF00543; Belongs to the P(II) protein family.
  
 
 0.799
DVU_0271
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
 
 
 0.778
DVU_0738
Substrate-binding protein, putative; Identified by match to protein family HMM PF01094.
  
    0.775
DVU_0482
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
 
 0.722
DVU_3215
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.693
DVU_1285
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.674
DVU_2966
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.664
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
 
 
 0.659
DVU_0140
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.651
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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