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DVU_0762 DVU_0762 DVU_0761 DVU_0761 DVU_0763 DVU_0763 DVU_0790 DVU_0790 DVU_0760 DVU_0760 DVU_2849 DVU_2849
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0762Conserved hypothetical protein; Identified by similarity to SP:Q8XBS4. (156 aa)    
Predicted Functional Partners:
DVU_0761
Lipoprotein, putative.
  
    0.700
DVU_0763
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.553
DVU_0790
Radical SAM protein, TIGR01212 family; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212.
   
    0.449
DVU_0760
Hypothetical protein; Identified by Glimmer2; putative.
       0.443
DVU_2849
Tail fiber protein, putative.
  
     0.412
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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