Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_0354 | DVU_0766 | DVU_0354 | DVU_0766 | Conserved domain protein; Identified by similarity to OMNI:NTL01AT2375. | Transporter, putative; Identified by match to protein family HMM PF04972. | 0.569 |
DVU_0765 | DVU_0766 | DVU_0765 | DVU_0766 | Hydroxypyruvate reductase, putative; Identified by similarity to SP:Q44472; match to protein family HMM PF05161. | Transporter, putative; Identified by match to protein family HMM PF04972. | 0.495 |
DVU_0766 | DVU_0354 | DVU_0766 | DVU_0354 | Transporter, putative; Identified by match to protein family HMM PF04972. | Conserved domain protein; Identified by similarity to OMNI:NTL01AT2375. | 0.569 |
DVU_0766 | DVU_0765 | DVU_0766 | DVU_0765 | Transporter, putative; Identified by match to protein family HMM PF04972. | Hydroxypyruvate reductase, putative; Identified by similarity to SP:Q44472; match to protein family HMM PF05161. | 0.495 |
DVU_0766 | DVU_0975 | DVU_0766 | DVU_0975 | Transporter, putative; Identified by match to protein family HMM PF04972. | Conserved hypothetical protein; Identified by similarity to SP:P26650; match to protein family HMM PF04751; Belongs to the UPF0307 family. | 0.449 |
DVU_0766 | bfr | DVU_0766 | DVU_1397 | Transporter, putative; Identified by match to protein family HMM PF04972. | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | 0.450 |
DVU_0766 | gmhA | DVU_0766 | DVU_1889 | Transporter, putative; Identified by match to protein family HMM PF04972. | Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. | 0.518 |
DVU_0975 | DVU_0766 | DVU_0975 | DVU_0766 | Conserved hypothetical protein; Identified by similarity to SP:P26650; match to protein family HMM PF04751; Belongs to the UPF0307 family. | Transporter, putative; Identified by match to protein family HMM PF04972. | 0.449 |
bfr | DVU_0766 | DVU_1397 | DVU_0766 | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. | Transporter, putative; Identified by match to protein family HMM PF04972. | 0.450 |
gmhA | DVU_0766 | DVU_1889 | DVU_0766 | Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate. | Transporter, putative; Identified by match to protein family HMM PF04972. | 0.518 |