STRINGSTRING
DVU_0810 DVU_0810 DVU_3190 DVU_3190 gatC gatC DVU_1589 DVU_1589 DVU_1682 DVU_1682 DVU_0843 DVU_0843 DVU_2459 DVU_2459 DVU_0772 DVU_0772 lptD lptD DVU_3084 DVU_3084 DVU_2527 DVU_2527
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0810Hypothetical protein; Identified by Glimmer2; putative. (686 aa)    
Predicted Functional Partners:
DVU_3190
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.779
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
    0.777
DVU_1589
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.777
DVU_1682
GAF domain protein; Identified by match to protein family HMM PF01590.
  
    0.761
DVU_0843
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.755
DVU_2459
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.749
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.748
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
    0.748
DVU_3084
Transcriptional regulator, putative; Identified by similarity to SP:Q04152.
  
    0.731
DVU_2527
Transcriptional regulator, putative; Identified by similarity to SP:P55323.
  
     0.730
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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