Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_0041 | DVU_0858 | DVU_0041 | DVU_0858 | Transglycosylase, SLT family; Identified by similarity to OMNI:SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476. | Lipoprotein, putative. | 0.565 |
DVU_0041 | tolB | DVU_0041 | DVU_3103 | Transglycosylase, SLT family; Identified by similarity to OMNI:SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476. | tolB protein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.472 |
DVU_0266 | DVU_0858 | DVU_0266 | DVU_0858 | Hypothetical protein; Identified by Glimmer2; putative. | Lipoprotein, putative. | 0.634 |
DVU_0266 | rpsB | DVU_0266 | DVU_0874 | Hypothetical protein; Identified by Glimmer2; putative. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.436 |
DVU_0858 | DVU_0041 | DVU_0858 | DVU_0041 | Lipoprotein, putative. | Transglycosylase, SLT family; Identified by similarity to OMNI:SO4017; match to protein family HMM PF01464; match to protein family HMM PF01476. | 0.565 |
DVU_0858 | DVU_0266 | DVU_0858 | DVU_0266 | Lipoprotein, putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.634 |
DVU_0858 | DVU_1668 | DVU_0858 | DVU_1668 | Lipoprotein, putative. | Outer membrane lipoprotein carrier protein, putative; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.590 |
DVU_0858 | poR | DVU_0858 | DVU_3025 | Lipoprotein, putative. | Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855. | 0.623 |
DVU_0858 | rpsB | DVU_0858 | DVU_0874 | Lipoprotein, putative. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.601 |
DVU_0858 | rpsD | DVU_0858 | DVU_1328 | Lipoprotein, putative. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.568 |
DVU_0858 | rpsF | DVU_0858 | DVU_0956 | Lipoprotein, putative. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.643 |
DVU_0858 | rpsL | DVU_0858 | DVU_1298 | Lipoprotein, putative. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.598 |
DVU_0858 | rpsN | DVU_0858 | DVU_1316 | Lipoprotein, putative. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.606 |
DVU_0858 | tolB | DVU_0858 | DVU_3103 | Lipoprotein, putative. | tolB protein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.831 |
DVU_1668 | DVU_0858 | DVU_1668 | DVU_0858 | Outer membrane lipoprotein carrier protein, putative; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Lipoprotein, putative. | 0.590 |
DVU_1668 | tolB | DVU_1668 | DVU_3103 | Outer membrane lipoprotein carrier protein, putative; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | tolB protein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.467 |
poR | DVU_0858 | DVU_3025 | DVU_0858 | Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855. | Lipoprotein, putative. | 0.623 |
poR | rpsB | DVU_3025 | DVU_0874 | Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.482 |
poR | rpsL | DVU_3025 | DVU_1298 | Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.549 |
rpsB | DVU_0266 | DVU_0874 | DVU_0266 | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.436 |
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