STRINGSTRING
DVU_0884 DVU_0884 DVU_0883 DVU_0883 DVU_3290 DVU_3290 DVU_1586 DVU_1586 DVU_3291 DVU_3291 DVU_0742 DVU_0742 DVU_1241 DVU_1241 DVU_3292 DVU_3292 DVU_1021 DVU_1021 DVU_2962 DVU_2962 DVU_0882 DVU_0882
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
DVU_0884Conserved hypothetical protein; Identified by similarity to GP:2649026. (114 aa)    
Predicted Functional Partners:
DVU_0883
Glutaredoxin, putative; Identified by match to protein family HMM PF00462.
 
  
 0.960
DVU_3290
Conserved domain protein; Identified by similarity to OMNI:NTL01TT0760.
  
     0.584
DVU_1586
Thioredoxin family protein; Identified by similarity to SP:P36893.
   
 
 0.554
DVU_3291
Glutamate synthase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF01645; Belongs to the glutamate synthase family.
  
   
 0.538
DVU_0742
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.507
DVU_1241
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1126.
  
    0.481
DVU_3292
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070.
  
   
 0.464
DVU_1021
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA4295; match to protein family HMM PF01458.
 
  
 0.427
DVU_2962
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
  
 0.427
DVU_0882
Hypothetical protein; Identified by Glimmer2; putative.
       0.414
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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