Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0665 | lipA | DVU_0665 | DVU_0905 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. | 0.629 |
| DVU_0665 | lpdA | DVU_0665 | DVU_1423 | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase; Identified by similarity to SP:O34324; match to protein family HMM PF00070; match to protein family HMM PF02852. | 0.471 |
| DVU_0907 | DVU_0908 | DVU_0907 | DVU_0908 | Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443. | Iron-sulfur cluster-binding protein, putative. | 0.839 |
| DVU_0907 | DVU_0909 | DVU_0907 | DVU_0909 | Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443. | Hypothetical protein; Identified by Glimmer2; putative. | 0.516 |
| DVU_0907 | lipA | DVU_0907 | DVU_0905 | Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443. | Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. | 0.790 |
| DVU_0907 | lipB | DVU_0907 | DVU_0906 | Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443. | Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | 0.799 |
| DVU_0908 | DVU_0907 | DVU_0908 | DVU_0907 | Iron-sulfur cluster-binding protein, putative. | Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443. | 0.839 |
| DVU_0908 | DVU_0909 | DVU_0908 | DVU_0909 | Iron-sulfur cluster-binding protein, putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.515 |
| DVU_0908 | lipA | DVU_0908 | DVU_0905 | Iron-sulfur cluster-binding protein, putative. | Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. | 0.807 |
| DVU_0908 | lipB | DVU_0908 | DVU_0906 | Iron-sulfur cluster-binding protein, putative. | Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | 0.838 |
| DVU_0909 | DVU_0907 | DVU_0909 | DVU_0907 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443. | 0.516 |
| DVU_0909 | DVU_0908 | DVU_0909 | DVU_0908 | Hypothetical protein; Identified by Glimmer2; putative. | Iron-sulfur cluster-binding protein, putative. | 0.515 |
| DVU_0909 | lipA | DVU_0909 | DVU_0905 | Hypothetical protein; Identified by Glimmer2; putative. | Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. | 0.508 |
| DVU_0909 | lipB | DVU_0909 | DVU_0906 | Hypothetical protein; Identified by Glimmer2; putative. | Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | 0.508 |
| gcvH | lipA | DVU_1426 | DVU_0905 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. | 0.943 |
| gcvH | lipB | DVU_1426 | DVU_0906 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. | 0.935 |
| gcvH | lpdA | DVU_1426 | DVU_1423 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase; Identified by similarity to SP:O34324; match to protein family HMM PF00070; match to protein family HMM PF02852. | 0.995 |
| guaA | lipA | DVU_1043 | DVU_0905 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. | 0.540 |
| lipA | DVU_0665 | DVU_0905 | DVU_0665 | Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. | Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family. | 0.629 |
| lipA | DVU_0907 | DVU_0905 | DVU_0907 | Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. | Conserved domain protein; Identified by similarity to OMNI:NTL01BM0443. | 0.790 |
page 1 of 2