STRINGSTRING
DVU_0922 DVU_0922 DVU_2896 DVU_2896 DVU_1447 DVU_1447 DVU_1804 DVU_1804 DVU_3201 DVU_3201 DVU_2077 DVU_2077 DVU_0902 DVU_0902 DVU_0311 DVU_0311 DVU_1464 DVU_1464 DVU_0583 DVU_0583 DVU_2937 DVU_2937
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0922Cytochrome c family protein. (185 aa)    
Predicted Functional Partners:
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
    0.683
DVU_1447
CgeB family protein.
  
    0.647
DVU_1804
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
    0.597
DVU_3201
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.587
DVU_2077
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130.
  
     0.579
DVU_0902
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.559
DVU_0311
Flagellar assembly protein FliH, putative; Identified by similarity to SP:P31068.
  
    0.551
DVU_1464
Identified by match to protein family HMM PF01075.
  
    0.539
DVU_0583
Lipoprotein, putative; Identified by match to protein family HMM PF01094.
 
  
 0.528
DVU_2937
TPR domain protein/response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515.
  
  
 0.484
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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