Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_0624 | DVU_0964 | DVU_0624 | DVU_0964 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Identified by match to protein family HMM PF00208. | 0.900 |
| DVU_0624 | glnA | DVU_0624 | DVU_3392 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Glutamine synthetase, type I; Identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653. | 0.906 |
| DVU_0624 | glnN | DVU_0624 | DVU_1258 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Glutamine synthetase, type III; Identified by similarity to GP:9651982; match to protein family HMM PF00120; Belongs to the glutamine synthetase family. | 0.900 |
| DVU_0624 | nrfA | DVU_0624 | DVU_0625 | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | Cytochrome c nitrite reductase, catalytic subunit NfrA, putative; Catalytic subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Has both nitrite and sulfite reductase activities. Catalyzes the reduction of nitrite to ammonia, consuming six electrons acquired by the electron donor subunit NrfH from the menaquinone pool, in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced [...] | 0.999 |
| DVU_0964 | DVU_0624 | DVU_0964 | DVU_0624 | Identified by match to protein family HMM PF00208. | NapC/NirT cytochrome c family protein; Electron donor subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Acquires electrons from the menaquinone pool and mediates their transfer to the catalytic subunit NrfA in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced by other organisms living in the same environment (Probable). Belongs to the NapC/NirT/NrfH family. | 0.900 |
| DVU_0964 | DVU_1613 | DVU_0964 | DVU_1613 | Identified by match to protein family HMM PF00208. | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. | 0.906 |
| DVU_0964 | DVU_3291 | DVU_0964 | DVU_3291 | Identified by match to protein family HMM PF00208. | Glutamate synthase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF01645; Belongs to the glutamate synthase family. | 0.919 |
| DVU_0964 | argJ | DVU_0964 | DVU_0823 | Identified by match to protein family HMM PF00208. | Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.900 |
| DVU_0964 | glnA | DVU_0964 | DVU_3392 | Identified by match to protein family HMM PF00208. | Glutamine synthetase, type I; Identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653. | 0.916 |
| DVU_0964 | glnN | DVU_0964 | DVU_1258 | Identified by match to protein family HMM PF00208. | Glutamine synthetase, type III; Identified by similarity to GP:9651982; match to protein family HMM PF00120; Belongs to the glutamine synthetase family. | 0.901 |
| DVU_0964 | gltA | DVU_0964 | DVU_2476 | Identified by match to protein family HMM PF00208. | Glutamate synthase, small subunit; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01316. | 0.907 |
| DVU_0964 | nrfA | DVU_0964 | DVU_0625 | Identified by match to protein family HMM PF00208. | Cytochrome c nitrite reductase, catalytic subunit NfrA, putative; Catalytic subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Has both nitrite and sulfite reductase activities. Catalyzes the reduction of nitrite to ammonia, consuming six electrons acquired by the electron donor subunit NrfH from the menaquinone pool, in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced [...] | 0.900 |
| DVU_0964 | purQ | DVU_0964 | DVU_1622 | Identified by match to protein family HMM PF00208. | Phosphoribosylformylglycinamidine synthase I. | 0.901 |
| DVU_0964 | putA | DVU_0964 | DVU_3319 | Identified by match to protein family HMM PF00208. | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.925 |
| DVU_1613 | DVU_0964 | DVU_1613 | DVU_0964 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. | Identified by match to protein family HMM PF00208. | 0.906 |
| DVU_1613 | DVU_3291 | DVU_1613 | DVU_3291 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. | Glutamate synthase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF01645; Belongs to the glutamate synthase family. | 0.995 |
| DVU_1613 | glnA | DVU_1613 | DVU_3392 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. | Glutamine synthetase, type I; Identified by similarity to SP:P12425; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653. | 0.923 |
| DVU_1613 | glnN | DVU_1613 | DVU_1258 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. | Glutamine synthetase, type III; Identified by similarity to GP:9651982; match to protein family HMM PF00120; Belongs to the glutamine synthetase family. | 0.909 |
| DVU_1613 | gltA | DVU_1613 | DVU_2476 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. | Glutamate synthase, small subunit; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01316. | 0.923 |
| DVU_1613 | purQ | DVU_1613 | DVU_1622 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. | Phosphoribosylformylglycinamidine synthase I. | 0.901 |
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