Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_0982 | DVU_0983 | DVU_0982 | DVU_0983 | PHP domain protein; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811. | Conserved hypothetical protein; Identified by similarity to SP:Q50604; match to protein family HMM PF02577. | 0.808 |
DVU_0982 | DVU_0985 | DVU_0982 | DVU_0985 | PHP domain protein; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811. | Hypothetical protein; Identified by Glimmer2; putative. | 0.580 |
DVU_0982 | miaB | DVU_0982 | DVU_0984 | PHP domain protein; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811. | tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.803 |
DVU_0983 | DVU_0982 | DVU_0983 | DVU_0982 | Conserved hypothetical protein; Identified by similarity to SP:Q50604; match to protein family HMM PF02577. | PHP domain protein; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811. | 0.808 |
DVU_0983 | DVU_0985 | DVU_0983 | DVU_0985 | Conserved hypothetical protein; Identified by similarity to SP:Q50604; match to protein family HMM PF02577. | Hypothetical protein; Identified by Glimmer2; putative. | 0.577 |
DVU_0983 | miaB | DVU_0983 | DVU_0984 | Conserved hypothetical protein; Identified by similarity to SP:Q50604; match to protein family HMM PF02577. | tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.803 |
DVU_0985 | DVU_0982 | DVU_0985 | DVU_0982 | Hypothetical protein; Identified by Glimmer2; putative. | PHP domain protein; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811. | 0.580 |
DVU_0985 | DVU_0983 | DVU_0985 | DVU_0983 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by similarity to SP:Q50604; match to protein family HMM PF02577. | 0.577 |
DVU_0985 | miaB | DVU_0985 | DVU_0984 | Hypothetical protein; Identified by Glimmer2; putative. | tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.572 |
miaB | DVU_0982 | DVU_0984 | DVU_0982 | tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | PHP domain protein; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811. | 0.803 |
miaB | DVU_0983 | DVU_0984 | DVU_0983 | tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | Conserved hypothetical protein; Identified by similarity to SP:Q50604; match to protein family HMM PF02577. | 0.803 |
miaB | DVU_0985 | DVU_0984 | DVU_0985 | tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | Hypothetical protein; Identified by Glimmer2; putative. | 0.572 |