Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_1059 | DVU_1550 | DVU_1059 | DVU_1550 | Aminotransferase, putative. | Identified by match to protein family HMM PF00300. | 0.415 |
| DVU_1059 | cobB-1 | DVU_1059 | DVU_0405 | Aminotransferase, putative. | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. | 0.564 |
| DVU_1059 | cobB-2 | DVU_1059 | DVU_3086 | Aminotransferase, putative. | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.554 |
| DVU_1059 | cobD | DVU_1059 | DVU_2237 | Aminotransferase, putative. | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.751 |
| DVU_1059 | cobH | DVU_1059 | DVU_3087 | Aminotransferase, putative. | precorrin-8X methylmutase; Identified by similarity to GP:15826199; match to protein family HMM PF02570. | 0.418 |
| DVU_1059 | cobO | DVU_1059 | DVU_1403 | Aminotransferase, putative. | cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids. | 0.402 |
| DVU_1059 | cobQ | DVU_1059 | DVU_0816 | Aminotransferase, putative. | Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.956 |
| DVU_1059 | cobS | DVU_1059 | DVU_0914 | Aminotransferase, putative. | Cobalamin-5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.496 |
| DVU_1059 | cobT | DVU_1059 | DVU_3279 | Aminotransferase, putative. | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.671 |
| DVU_1059 | cobU | DVU_1059 | DVU_1007 | Aminotransferase, putative. | Cobinamide kinase/cobinamide phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | 0.689 |
| DVU_1550 | DVU_1059 | DVU_1550 | DVU_1059 | Identified by match to protein family HMM PF00300. | Aminotransferase, putative. | 0.415 |
| DVU_1550 | cobQ | DVU_1550 | DVU_0816 | Identified by match to protein family HMM PF00300. | Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.719 |
| DVU_1550 | cobS | DVU_1550 | DVU_0914 | Identified by match to protein family HMM PF00300. | Cobalamin-5-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. | 0.646 |
| DVU_1550 | cobT | DVU_1550 | DVU_3279 | Identified by match to protein family HMM PF00300. | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). | 0.638 |
| DVU_1550 | cobU | DVU_1550 | DVU_1007 | Identified by match to protein family HMM PF00300. | Cobinamide kinase/cobinamide phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. | 0.719 |
| cobB-1 | DVU_1059 | DVU_0405 | DVU_1059 | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. | Aminotransferase, putative. | 0.564 |
| cobB-1 | cobB-2 | DVU_0405 | DVU_3086 | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.926 |
| cobB-1 | cobD | DVU_0405 | DVU_2237 | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. | Cobalamin biosynthesis protein CobD, putative; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. | 0.864 |
| cobB-1 | cobH | DVU_0405 | DVU_3087 | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. | precorrin-8X methylmutase; Identified by similarity to GP:15826199; match to protein family HMM PF02570. | 0.992 |
| cobB-1 | cobO | DVU_0405 | DVU_1403 | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. | cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids. | 0.943 |
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