STRINGSTRING
DVU_1019 DVU_1019 DVU_1020 DVU_1020 DVU_1017 DVU_1017 DVU_1018 DVU_1018 DVU_1013 DVU_1013 DVU_1012 DVU_1012 DVU_1959 DVU_1959 DVU_1414 DVU_1414 DVU_1545 DVU_1545 DVU_0022 DVU_0022 DVU_2127 DVU_2127
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1019Conserved domain protein; Identified by similarity to OMNI:VCA1081. (406 aa)    
Predicted Functional Partners:
DVU_1020
HD domain/sensory box protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00229.
 
  
 0.978
DVU_1017
ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 0.967
DVU_1018
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
  
 0.959
DVU_1013
Type I secretion outer membrane protein, TolC family; Identified by similarity to GP:150976; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
  
 0.812
DVU_1012
Hemolysin-type calcium-binding repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612.
 
   
 0.806
DVU_1959
EAL domain/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 
 0.657
DVU_1414
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
   
 
 0.608
DVU_1545
Hemolysin-type calcium-binding repeat/calx-beta domain protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612.
 
   
 0.594
DVU_0022
HAMP domain/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
   
 
 0.593
DVU_2127
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
      
 0.569
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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