STRINGSTRING
DVU_1020 DVU_1020 DVU_1019 DVU_1019 DVU_1017 DVU_1017 DVU_1018 DVU_1018 DVU_0667 DVU_0667 DVU_1012 DVU_1012 DVU_0449 DVU_0449 DVU_2127 DVU_2127 poR poR DVU_0636 DVU_0636 DVU_0186 DVU_0186
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1020HD domain/sensory box protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00229. (701 aa)    
Predicted Functional Partners:
DVU_1019
Conserved domain protein; Identified by similarity to OMNI:VCA1081.
 
  
 0.978
DVU_1017
ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 0.887
DVU_1018
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
    0.834
DVU_0667
HD domain protein; Identified by match to protein family HMM PF01966.
  
     0.775
DVU_1012
Hemolysin-type calcium-binding repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612.
  
  
 0.652
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.588
DVU_2127
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
      
 0.559
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
  
   0.510
DVU_0636
Response regulator/GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   
 0.492
DVU_0186
Conserved hypothetical protein; Identified by similarity to OMNI:AF2126; match to protein family HMM PF02596.
  
    0.474
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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