STRINGSTRING
DVU_1049 DVU_1049 ccmB ccmB ccmC ccmC ccmF ccmF livG livG ccmE ccmE DVU_2888 DVU_2888 DVU_0715 DVU_0715 DVU_0648 DVU_0648 ksgA ksgA rpsE rpsE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1049ABC transporter, ATP-binding protein; Identified by similarity to SP:P46903; match to protein family HMM PF00005. (216 aa)    
Predicted Functional Partners:
ccmB
Cytochrome c-type biogenesis protein CcmB.
 
 
  0.983
ccmC
Cytochrome c-type biogenesis protein CcmC; Identified by similarity to SP:P33929; match to protein family HMM PF01578.
 
 
  0.955
ccmF
Cytochrome c-type biogenesis protein CcmF; Identified by match to protein family HMM PF01578.
 
    0.865
livG
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
     
0.781
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
    0.776
DVU_2888
Cobalt ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:Q05596; match to protein family HMM PF00005.
 
     0.745
DVU_0715
Branched-chain amino acid ABC transporter, ATP binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
   
0.743
DVU_0648
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to SP:P07821; match to protein family HMM PF00005.
  
     0.643
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.625
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
    0.587
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.