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DVU_1052 DVU_1052 ccmE ccmE guaA guaA DVU_1053 DVU_1053 ybeY ybeY ccmB ccmB adk adk DVU_1054 DVU_1054 ccmF ccmF DVU_1049 DVU_1049 DVU_0126 DVU_0126
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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Experiments
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Textmining
[Homology]
Score
DVU_1052CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595. (354 aa)    
Predicted Functional Partners:
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
     0.620
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.603
DVU_1053
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.531
ccmB
Cytochrome c-type biogenesis protein CcmB.
 
     0.490
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
 
     0.477
DVU_1054
Hydrolase, HAD-superfamily, subfamily IIIA; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
       0.454
ccmF
Cytochrome c-type biogenesis protein CcmF; Identified by match to protein family HMM PF01578.
       0.432
DVU_1049
ABC transporter, ATP-binding protein; Identified by similarity to SP:P46903; match to protein family HMM PF00005.
  
    0.423
DVU_0126
ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.
  
  
 0.405
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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