DVU_1057 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_1057

Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361. (256 aa)

Predicted Functional Partners:

DVU_1056

0.999

cbiM

0.999

DVU_2769

0.963

DVU_2889

0.930

DVU_1072

0.804

truA

0.722

cobL

0.655

cbiG

0.623

nikR

0.588

adk

0.556

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_1056	DVU_1057	DVU_1056	DVU_1057	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	0.999
DVU_1056	DVU_1072	DVU_1056	DVU_1072	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Conserved hypothetical protein; Identified by similarity to OMNI:BR1366.	0.802
DVU_1056	DVU_2769	DVU_1056	DVU_2769	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1523.	0.962
DVU_1056	DVU_2889	DVU_1056	DVU_2889	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Identified by match to protein family HMM PF02632.	0.913
DVU_1056	cbiG	DVU_1056	DVU_3169	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalamin biosynthesis protein CbiG; Identified by similarity to SP:Q05631; match to protein family HMM PF01890.	0.492
DVU_1056	cbiM	DVU_1056	DVU_1058	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.	0.998
DVU_1056	cobL	DVU_1056	DVU_2749	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	precorrin-6Y C5,15-methyltransferase (decarboxylating); Identified by similarity to SP:P21921; match to protein family HMM PF00590; match to protein family HMM TIGR01468.	0.590
DVU_1056	nikR	DVU_1056	DVU_2891	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	Nickel responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.	0.582
DVU_1056	truA	DVU_1056	DVU_0911	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.	0.704
DVU_1057	DVU_1056	DVU_1057	DVU_1056	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.999
DVU_1057	DVU_1072	DVU_1057	DVU_1072	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	Conserved hypothetical protein; Identified by similarity to OMNI:BR1366.	0.804
DVU_1057	DVU_2769	DVU_1057	DVU_2769	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1523.	0.963
DVU_1057	DVU_2889	DVU_1057	DVU_2889	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	Identified by match to protein family HMM PF02632.	0.930
DVU_1057	adk	DVU_1057	DVU_1932	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	0.556
DVU_1057	cbiG	DVU_1057	DVU_3169	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	Cobalamin biosynthesis protein CbiG; Identified by similarity to SP:Q05631; match to protein family HMM PF01890.	0.623
DVU_1057	cbiM	DVU_1057	DVU_1058	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.	0.999
DVU_1057	cobL	DVU_1057	DVU_2749	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	precorrin-6Y C5,15-methyltransferase (decarboxylating); Identified by similarity to SP:P21921; match to protein family HMM PF00590; match to protein family HMM TIGR01468.	0.655
DVU_1057	nikR	DVU_1057	DVU_2891	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	Nickel responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.	0.588
DVU_1057	truA	DVU_1057	DVU_0911	Cobalt ABC transporter, permease protein, putative; Identified by similarity to OMNI:BR1367; match to protein family HMM PF02361.	tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.	0.722
DVU_1072	DVU_1056	DVU_1072	DVU_1056	Conserved hypothetical protein; Identified by similarity to OMNI:BR1366.	Cobalt ABC transporter, ATP-binding protein, putative; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).	0.802

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About