STRINGSTRING
DVU_1073 DVU_1073 DVU_0638 DVU_0638 DVU_1072 DVU_1072 DVU_2522 DVU_2522 rpmH rpmH DVU_0691 DVU_0691 DVU_2225 DVU_2225 rnpA rnpA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1073Conserved domain protein; Identified by similarity to OMNI:NT01MC2073. (308 aa)    
Predicted Functional Partners:
DVU_0638
Membrane protein, putative; Identified by similarity to OMNI:CT0045.
  
     0.665
DVU_1072
Conserved hypothetical protein; Identified by similarity to OMNI:BR1366.
  
    0.501
DVU_2522
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.451
rpmH
Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.
       0.442
DVU_0691
Membrane protein, putative.
  
     0.416
DVU_2225
acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit.
  
     0.413
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.411
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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